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Scientist I, Biochemistry & Lead Discovery

Flagship Pioneering, Inc

Company websiteflagshippioneering.com (Flagship Pioneering, Inc, opens in new tab)

Base salary $100,000  to $126,500

Employer-published annual base salary, USD. Advertised base range in United States

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  • LocationUnited States
  • WorkplaceWorkplace not stated
  • Status at last checkSource accepting applications when checked
  • Last checked (15 min ago) · observed since

About this job

COMPANY DESCRIPTION
 
Flagship Labs 111 Inc. (FL111) is a privately held, early-stage biotechnology company pioneering a novel platform harnessing innovations in chemistry, computation, and data science to create new therapeutic modalities beyond traditional small molecules. FL111 is backed by Flagship Pioneering, bringing the courage, vision, and resources to guide FL111 from platform validation to patient impact. We are seeking collaborative, creative and relentless problem solvers that share our passion for impact to join us!

THE ROLE

FL111 is seeking an independent and motivated lab scientist with deep understanding of biochemical and biophysical assay design to join the Biochemistry team. This role will lead assay development, target engagement studies, and binding characterization for small molecules, heterobifunctionals, and related modalities, working closely with chemistry and biology to inform hit-to-lead optimization and mechanism-of-action questions. This role also contributes to team leadership, cross-functional collaborations, and broader scientific discussions that support organizational growth.

KEY RESPONSIBILITIES

  • Lead and execute biochemical assay development to monitor protein/ligand and protein/protein interactions
  • Apply readout technologies such as FP, FRET, NanoBRET, or NanoBiT across active programs
  • Drive protein purification and QC processes to support ongoing discovery efforts
  • Set up and run high-throughput assays, troubleshooting independently to keep programs moving
  • Partner with contract research organizations as needed to extend internal capacity
  • Collaborate cross-functionally and contribute scientific input across multiple concurrent projects

PROFESSIONAL EXPERIENCE & QUALIFICATIONS

  • MS or PhD in Biochemistry, Chemical Biology, Enzymology, or a related field
    • MS and at least 8 years of relevant academic or industry experience
    • PhD and 0-2 years of relevant academic or industry experience
  • Deep understanding of protein chemistry and biophysics, with hands-on experience working with small-molecule compounds
  • Demonstrated ability to develop and troubleshoot biochemical assays independently
  • Excellent communication skills and the ability to work cross-functionally
  • A high degree of scientific independence, motivation, and solutions-oriented thinking
  • Comfort operating in a fast-paced environment with shifting priorities
  • Experience working with CROs is a plus

Location: Cambridge, MA 

About Flagship Pioneering

Flagship Pioneering is a bioplatform innovation company that invents and builds platform companies, each with the potential for multiple products that transform human health or sustainability. Since its launch in 2000, Flagship has originated and fostered more than 100 scientific ventures, resulting in more than $90 billion in aggregate value. Many of the companies Flagship has founded have addressed humanity’s most urgent challenges: vaccinating billions of people against COVID-19, curing intractable diseases, improving human health, preempting illness, and feeding the world by improving the resiliency and sustainability of agriculture.  Flagship has been recognized twice on FORTUNE’s “Change the World” list, an annual ranking of companies that have made a positive social and environmental impact through activities that are part of their core business strategies, and has been twice named to Fast Company’s annual list of the World’s Most Innovative Companies. Learn more about Flagship at www.flagshippioneering.com.

Flagship Pioneering is committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status.

At Flagship, we recognize there is no perfect candidate. If you have some of the experience listed above but not all, please apply anyway. Experience comes in many forms, skills are transferable, and passion goes a long way. We are dedicated to building diverse and inclusive teams and look forward to learning more about your unique background.

Recruitment & Staffing Agencies: Flagship Pioneering and its affiliated Flagship Lab companies (collectively, “FSP”) do not accept unsolicited resumes from any source other than candidates. The submission of unsolicited resumes by recruitment or staffing agencies to FSP or its employees is strictly prohibited unless contacted directly by Flagship Pioneering’s internal Talent Acquisition team. Any resume submitted by an agency in the absence of a signed agreement will automatically become the property of FSP, and FSP will not owe any referral or other fees with respect thereto.

#LI-TL1

Privacy Notice for Applicants: When you apply for a role at Flagship Pioneering or one of its portfolio companies, we collect and use personal information you provide (such as your name, contact details, work history, and application materials) to evaluate your application, communicate with you, and comply with legal obligations. Your application data is processed through Greenhouse, our applicant tracking system, and may also be reviewed using AI-assisted screening tools. We do not sell your personal information. California residents have rights under the CCPA/CPRA including to know, delete, and opt out of the sharing of their personal information. If you are located in the EU or UK, we process your data under GDPR and you have rights to access, rectify, and erase your data. To exercise your rights or for questions, contact [email protected]. 

The salary range for this role is $100,000 - $126,500. Compensation for the role will depend on a number of factors, including a candidate’s qualifications, skills, competencies, and experience. FL111 currently offers healthcare coverage, annual incentive program, retirement benefits and a broad range of other benefits. Compensation and benefits information is based on FL111's good faith estimate as of the date of publication and may be modified in the future.

Privacy Notice for Applicants: When you apply for a role at Flagship Pioneering or one of its portfolio companies, we collect and use personal information you provide (such as your name, contact details, work history, and application materials) to evaluate your application, communicate with you, and comply with legal obligations. Your application data is processed through Greenhouse, our applicant tracking system, and may also be reviewed using AI-assisted screening tools. We do not sell your personal information. California residents have rights under the CCPA/CPRA including to know, delete, and opt out of the sharing of their personal information. If you are located in the EU or UK, we process your data under GDPR and you have rights to access, rectify, and erase your data. To exercise your rights or for questions, contact [email protected]. 

Source: Flagship Pioneering, Inc on Greenhouse · View original posting (opens in new tab)

Pay in context

This role's base floor ($100,000) is above 0% of the 1,809 Science & Research roles nationwide listed on this site; 37 others list the same floor. Their median floor is $153,000; the middle half runs from $124,714 to $180,060.

Only jobs on this site count, and each one publishes a base salary of $100,000 or more, so this compares six-figure jobs with each other, not with the whole market. Computed Nov 8, 2026.

This range next to 6 other live Flagship Pioneering, Inc roles with the nearest advertised base floor
Chart as a table
This range next to 6 other live Flagship Pioneering, Inc roles with the nearest advertised base floor
RolePublished base
Scientist I, Biochemistry & Lead Discovery (this listing)$100,000 - $126,500
Scientist I, In Vitro Pharmacology$100,000 - $126,500
Scientist, In Vivo Pharmacology$100K - $143K
(Senior) Scientist, Optical Technologies$100K - $180K
FL114: Scientist, Genomics$100,000 - $126,500
Senior Automation Engineer, Platform Biology$108,000 - $170,700
Senior Analog/Mixed-Signal Hardware Engineer, Single-Molecule Sensing Instrumentation$108K - $176K

Same $100K to $400K scale as every card. All Flagship Pioneering, Inc roles · How to read the bar

Observed changes

  1. First observed on the employer's board
  2. Began meeting the published-salary criteria
Observed since
Employer-stated posting date
2026-10-30
Where this pay comes from

Location as the employer wrote it: Cambridge, MA USA

USD 100,000 – 126,500 · annual (nosalary C: USD salary field >= $20,000) · salary · Pay Range

Method
Structured pay field published by the employer
Checked
Rule set
us-base-v2

The employer's job board publishes this pay as a dedicated data field. We read the field directly; no interpretation was needed.

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  • The pay is an annual base salary in US dollars with a minimum of at least $100,000.
  • The role was publicly listed on the employer's job board when last checked.

We do not verify what the employer will actually offer, whether the employer is still recruiting for the role, or anything beyond what the employer published. Full methodology.

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